Identification of a recombinant equine coronavirus in donkey, China.

Equine coronavirus (ECoV) was first identified in the USA and has been previously described in several countries. In order to test the presence of ECoV in China, we collected 51 small intestinal samples from donkey foals with diarrhoea from a donkey farm in Shandong Province, China between August 2020 and April 2021. Two samples tested positive for ECoV and full-length genome sequences were successfully obtained using next-generation sequencing, one of which was further confirmed by Sanger sequencing. The two strains shared 100% sequence identity at the scale of whole genome. Bioinformatics analyses further showed that the two Chinese strains represent a novel genetic variant of ECoV and shared the highest sequence identity of 97.05% with the first identified ECoV strain - NC99. In addition, it may be a recombinant, with the recombination region around the NS2 gene. To our knowledge, this is the first documented report of ECoV in China, highlighting its risk to horse/donkey breeding. In addition, its potential risk to public health also warrants further investigation.

Spatio-temporal evolution and influencing factors of COVID-19 epidemic in Zhejiang Province

The global outbreak of novel Coronavirus Disease (COVID-19) epidemic has seriously endangered people's health and hindered rapid economic development. Geographic analysis of spatial and temporal transmission patterns in key regions can help prevent and control the epidemic. This paper takes Zhejiang province as the research area. With the help of POI data, the methods such as textual analysis, mathematical statistics, and spatial regression analysis are used to analyze the socio-demographic characteristics of confirmed cases and the spatio-temporal evolution of the epidemic, and then analyze its influencing factors. The results show that: (1) The age distribution of confirmed cases spanned a wide range, showing normal distribution of "large in the middle and small at both ends." (2) The epidemic period is divided into five stages: the initial period, the outbreak period, the steady decline period, the internal stable period, and the oversea input period. The interval between the onset time and announcing a confirmed case was mostly 0-6 d, and the time interval of non-local cases is longer than that of local cases, and the onset of most of the non-local cases occur on the day the patients leave their original place. There was no significant gender difference in the proportion of daily incidence, and the proportion of age had stage features. (3) The spatial distribution aligned in the direction of "Southeast-Northwest", the evolution trend developed from "single place distribution" to "multi-area cluster cases" and then to "key input" evolution, with "high-high" "high-low" clustering characteristics;The migration path of confirmed cases presented an obvious core-edge structure, and the first significant flow was from the center of Wuhan. (4) By analyzing the factors affecting the distribution of the epidemic,it is found that the ratio of the elderly population, per capita GDP, the proportion of the tertiary industry, the number of industries above the scale, and the distance from Wuhan were the dominant factors. Finally, several suggestions on targeted prevention and control measures are made, and the weaknesses of the study and future directions of efforts are pointed out.

Spatiotemporal evolution, pattern of diffusion, and influencing factors of the COVID-19 epidemic in Hainan Province, China.

Within 1 month after the first case occurred in Hainan Province, China, the number of confirmed cases rose to 168, and there was no increase in almost 3 months. As the southernmost province and a famous tourist destination in China, its regular economic exchanges and high-intensity population movements may affect the spread of the epidemic. It is of great theoretical and practical significance to investigate the spatiotemporal evolution, the pattern of diffusion, and factors influencing the coronavirus disease 2019 (COVID-19) epidemic in Hainan Province. Basic and geographic information of confirmed COVID-19 cases was obtained from government websites and other official media. We examined the groups of infection and calculated the diffusion ratio to demonstrate the trend of the epidemic. Map drawing, spatial analysis, and partial least squares regression were used to express the spatiotemporal evolution, the pattern of diffusion, and factors affecting the epidemic. Furthermore, we have made recommendations on the formulation and adaptation of possible future preventive steps. Results show that the COVID-19 epidemic in Hainan Province has substantial spatial heterogeneity but minimal distribution. The tourist city and central city have formed a dual-core pattern for the spread of the epidemic, which could extend to other similar regions. Population density, mobility, and level of urban development have been the major factors of epidemic distribution in the study area.

A proof of concept for neutralizing antibody-guided vaccine design against SARS-CoV-2.

Mutations and transient conformational movements of the receptor binding domain (RBD) that make neutralizing epitopes momentarily unavailable present immune escape routes for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). To mitigate viral escape, we developed a cocktail of neutralizing antibodies (NAbs) targeting epitopes located on different domains of spike (S) protein. Screening of a library of monoclonal antibodies generated from peripheral blood mononuclear cells of COVID-19 convalescent patients yielded potent NAbs, targeting the N-terminal domain (NTD) and RBD domain of S, effective at nM concentrations. Remarkably, a combination of RBD-targeting NAbs and NTD-binding NAbs, FC05, enhanced the neutralization potency in cell-based assays and an animal model. Results of competitive surface plasmon resonance assays and cryo-electron microscopy (cryo-EM) structures of antigen-binding fragments bound to S unveil determinants of immunogenicity. Combinations of immunogens, identified in the NTD and RBD of S, when immunized in rabbits and macaques, elicited potent protective immune responses against SARS-CoV-2. More importantly, two immunizations of this combination of NTD and RBD immunogens provided complete protection in macaques against a SARS-CoV-2 challenge, without observable antibody-dependent enhancement of infection. These results provide a proof of concept for neutralization-based immunogen design targeting SARS-CoV-2 NTD and RBD.

Consensus on Pre-examination and Triage in Clinic of Dermatology During Outbreak of COVID-19 From Chinese Experts.

The 2019 novel coronavirus infection has brought a great challenge in prevention and control of the national epidemic of coronavirus disease 2019 (COVID-19) in China. During the fight against the epidemic of COVID-19, properly carrying out pre-examination and triage for patients with skin lesions and fever has been a practical problem encountered in hospitals for skin diseases as well as clinics of dermatology in general hospitals. Considering that certain skin diseases may have symptom of fever, and some of the carriers of 2019 novel coronavirus and patients with COVID-19 at their early stage may do not present any symptoms of COVID-19, to properly deal with the visitors to clinics of dermatology, the Chinese Society of Dermatology organized experts to formulate the principles and procedures for pre-examination and triage of visitors to clinics of dermatology during the epidemic of COVID-19.

Spatio-temporal evolution and influencing mechanism of the COVID-19 epidemic in Shandong province, China.

The novel coronavirus pneumonia (COVID-19) outbreak that emerged in late 2019 has posed a severe threat to human health and social and economic development, and thus has become a major public health crisis affecting the world. The spread of COVID-19 in population and regions is a typical geographical process, which is worth discussing from the geographical perspective. This paper focuses on Shandong province, which has a high incidence, though the first Chinese confirmed case was reported from Hubei province. Based on the data of reported confirmed cases and the detailed information of cases collected manually, we used text analysis, mathematical statistics and spatial analysis to reveal the demographic characteristics of confirmed cases and the spatio-temporal evolution process of the epidemic, and to explore the comprehensive mechanism of epidemic evolution and prevention and control. The results show that: (1) the incidence rate of COVID-19 in Shandong is 0.76/100,000. The majority of confirmed cases are old and middle-aged people who are infected by the intra-province diffusion, followed by young and middle-aged people who are infected outside the province. (2) Up to February 5, the number of daily confirmed cases shows a trend of "rapid increase before slowing down", among which, the changes of age and gender are closely related to population migration, epidemic characteristics and intervention measures. (3) Affected by the regional economy and population, the spatial distribution of the confirmed cases is obviously unbalanced, with the cluster pattern of "high-low" and "low-high". (4) The evolution of the migration pattern, affected by the geographical location of Wuhan and Chinese traditional culture, is dominated by "cross-provincial" and "intra-provincial" direct flow, and generally shows the trend of "southwest → northeast". Finally, combined with the targeted countermeasures of "source-flow-sink", the comprehensive mechanism of COVID-19 epidemic evolution and prevention and control in Shandong is revealed. External and internal prevention and control measures are also figured out.

Structurally vulnerable neighborhood environments and racial/ethnic COVID-19 inequities.

Preliminary evidence suggests that the experience of the novel coronavirus is not shared equally across geographic areas. Findings in the United States suggest that the burden of COVID-19 morbidity and mortality may be hardest felt in disadvantaged and racially segregated places. Deprived neighborhoods are disproportionately populated by people of color, the same populations that are becoming sicker and dying more often from COVID-19. This commentary examines how structurally vulnerable neighborhoods contribute to racial/ethnic inequities in SARS-COV-2 exposure and COVID-19 morbidity and mortality and considers opportunities to intervene through place-based initiatives and the implementation of a Health in All Policies strategy.